About
Discord Stateoftheart AI
GitHub

Publications

312

Cited by

39592

Brendan Frey

drug developmentartificial intelligencemachine learningcomputational biologygenome biology
University of Toronto

Canada

Papers and Citations

1 - 50
Factor graphs and the sum-product algorithm
2001
Frank R. Kschischang
Brendan Frey
HA Loeliger
Cited by 7125
Clustering by passing messages between data points
2007
Brendan Frey
D Dueck
Cited by 6026
Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
2008
Brendan Frey
Ofer Shai
Benjamin J. Blencowe
+2
Cited by 3197
Adversarial autoencoders
2015
Alireza Makhzani
Ian Goodfellow
Jon Shlens
+2
Cited by 1732
Predicting the sequence specificities of DNA-and RNA-binding proteins by deep learning
2015
Matthew T. Weirauch
Andrew Delong
Brendan Frey
+1
Cited by 1473
The" wake-sleep" algorithm for unsupervised neural networks
1995
Geoffrey Hinton
Brendan Frey
Radford Neal
+1
Cited by 1120
A compendium of RNA-binding motifs for decoding gene regulation
2013
Kate B Cook
Quaid Morris
Hilal Kazan
+32
Cited by 957
Deciphering the splicing code
2010
John Calarco
Xinchen Wang
Brendan Frey
+5
Cited by 865
The human splicing code reveals new insights into the genetic determinants of disease
2015
Nebojsa Jojic
Brendan Frey
Leo J. Lee
+14
Cited by 838
The evolutionary landscape of alternative splicing in vertebrate species
2012
Manuel Irimia
Brendan Frey
Hui Yuan Xiong
+14
Cited by 747
Iterative decoding of compound codes by probability propagation in graphical models
1998
Frank R. Kschischang
Brendan Frey
Cited by 514
Global survey of organ and organelle protein expression in mouse: combined proteomic and transcriptomic profiling
2006
Pingzhao Hu
Quaid Morris
Brian Cox
+11
Cited by 502
Exploring the mode-of-action of bioactive compounds by chemical-genetic profiling in yeast
2006
Brendan Frey
Inmar Givoni
Christopher A Gray
+22
Cited by 473
Document Image Analysis
1986
Nebojsa Jojic
Brendan Frey
Cited by 469
A revolution: Belief propagation in graphs with cycles
1998
David MacKay
Brendan Frey
Cited by 438
Deep learning of the tissue-regulated splicing code
2014
Michael K.K. Leung
Leo J. Lee
Hui Yuan Xiong
+1
Cited by 431
Using expression profiling data to identify human microRNA targets
2007
Brendan Frey
Quaid Morris
Jim Huang
+7
Cited by 424
Widespread intron retention in mammals functionally tunes transcriptomes
2014
Nuno Barbosa-Morais
Babak Alipanahi
Ulrich Braunschweig
+6
Cited by 386
The functional landscape of mouse gene expression
2004
Malina A. Bakowski
Ofer Shai
Brendan Frey
+23
Cited by 345
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
2017
Jonathan Bingham
Irene Drmic
Jeremy R Parr
+80
Cited by 345
Revealing global regulatory features of mammalian alternative splicing using a quantitative microarray platform
2004
Quaid Morris
Ofer Shai
Brendan Frey
+9
Cited by 341
Non-metric affinity propagation for unsupervised image categorization
2007
Brendan Frey
D Dueck
Cited by 320
Learning flexible sprites in video layers
2001
Nebojsa Jojic
Brendan Frey
Cited by 309
Epitomic analysis of appearance and shape
2003
Brendan Frey
Nebojsa Jojic
Anitha Kannan
Cited by 299
Adaptive dropout for training deep neural networks
2013
Brendan Frey
J Ba
Cited by 290
MBNL proteins repress ES-cell-specific alternative splicing and reprogramming
2013
P Joel Ross
Hoon-Ki Sung
Manuel Irimia
+20
Cited by 252
Probabilistic multimedia objects (multijects): A novel approach to video indexing and retrieval in multimedia systems
1998
Brendan Frey
Thomas S. Huang
Milind Naphade
+1
Cited by 249
Classifying and segmenting microscopy images with deep multiple instance learning
2016
Brendan Frey
Oren Kraus
JL Ba
Cited by 246
A comparison of algorithms for inference and learning in probabilistic graphical models
2005
Brendan Frey
Nebojsa Jojic
Cited by 245
Quantitative microarray profiling provides evidence against widespread coupling of alternative splicing with nonsense-mediated mRNA decay to control gene expression
2006
Ofer Shai
Benjamin J Blencowe
Qun Pan
+5
Cited by 234
K-sparse autoencoders
2013
Alireza Makhzani
Brendan Frey
Cited by 218
Deep learning in biomedicine
2018
Andrew Delong
Michael Wainberg
Brendan Frey
+1
Cited by 209
Winner-take-all autoencoders
2015
Alireza Makhzani
Brendan Frey
Cited by 208
C2H2 zinc finger proteins greatly expand the human regulatory lexicon
2015
Brendan Frey
Hamed S. Najafabadi
Philip M. Kim
+10
Cited by 202
Video epitomes
2008
Vincent Cheung
Nebojsa Jojic
Brendan Frey
Cited by 199
Whole-genome sequencing expands diagnostic utility and improves clinical management in paediatric medicine
2016
Ronald D Cohn
Soghra Jougheh Doust
Julian Raiman
+60
Cited by 192
Identifying transcription factor functions and targets by phenotypic activation
2006
Owen Ryan
Richelle Sopko
Mark D Robinson
+7
Cited by 189
Machine learning in genomic medicine: a review of computational problems and data sets
2015
Babak Alipanahi
Andrew Delong
Michael K.K. Leung
+1
Cited by 187
Transformation-invariant clustering using the EM algorithm
2003
Brendan Frey
Nebojsa Jojic
Cited by 177
A binary variable model for affinity propagation
2009
Inmar Givoni
Brendan Frey
Cited by 172
Method and apparatus for removing noise from feature vectors
2006
Alex Acero
Brendan Frey
Li Deng
Cited by 164
Alternative splicing of conserved exons is frequently species-specific in human and mouse
2005
Benjamin J Blencowe
Qun Pan
Timothy R Hughes
+4
Cited by 162
Automated analysis of high‐content microscopy data with deep learning
2017
Oren Kraus
Brendan Frey
Y Chong
+4
Cited by 148
ALGONQUIN: Iterating Laplace's method to remove multiple types of acoustic distortion for robust speech recognition
2001
Brendan Frey
Trausti T Kristjansson
Li Deng
+1
Cited by 143
Bayesian inference of MicroRNA targets from sequence and expression data
2007
Jim Huang
Brendan Frey
Quaid Morris
Cited by 142
Genome-wide characteristics of de novo mutations in autism
2016
Brendan Frey
Ryan K.C. Yuen
Babak Alipanahi
+45
Cited by 136
Stel component analysis: Modeling spatial correlations in image class structure
2009
Nebojsa Jojic
Marco Cristani
Alessandro Perina
+2
Cited by 121
Mixture modeling by affinity propagation
2006
Brendan Frey
D Dueck
Cited by 120
Factor graphs and algorithms
1997
Frank R. Kschischang
Brendan Frey
N Wiberg
+1
Cited by 118
Comparative proteomics profiling of a phospholamban mutant mouse model of dilated cardiomyopathy reveals progressive intracellular stress responses
2008
Ailis Fagan
Marc Perry
Peter P Liu
+20
Cited by 117